Get samples that match the protocol

Get samples that match the protocol

samplesByProtocol(s, protocolName, caseSensitive = FALSE)

Arguments

s	samples, e.g. output of samples(project)
protocolName,	string name of the protocol
caseSensitive,	logical indicatinh whether the protocol match should be case sensitive

Value

a subset of samples that match the protocol

Examples

projectConfig = system.file("extdata",
"example_peps-master",
"example_piface",
"project_config.yaml",
package = "BiocProject")
p = Project(file = projectConfig)
#> Loaded config file: /Users/mstolarczyk/Uczelnia/UVA/code/BiocProject/inst/extdata/example_peps-master/example_piface/project_config.yaml
samplesByProtocol(samples(p), "PROTO2")
#>    sample_name protocol data_source        SRR Sample_geo_accession
#> 1:     sample3   proto2         SRA SRR5210398           GSM2471249
#>                                                                                                                     read1
#> 1: /Users/mstolarczyk/Uczelnia/UVA/code/BiocProject/inst/extdata/example_peps-master/example_piface/SRR5210398_1.fastq.gz
#>                                                                                                                     read2
#> 1: /Users/mstolarczyk/Uczelnia/UVA/code/BiocProject/inst/extdata/example_peps-master/example_piface/SRR5210398_2.fastq.gz