An R package that provides functions for 1) calculating and 2) visualizing a variety of statistics for a collection of genomic ranges. If you have a set of genomic ranges, such as a BED file the GenomicDistributions R package can help you to explore, annotate, visualize,and compare it.
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("GenomicDistributions")
Or from GitHub:
GenomicDistributionsData: includes full data files, too large to include in GenomicDistributions
See the vignettes for more information: http://code.databio.org/GenomicDistributions
In the long_vignettes are vignettes that require large external data and take a long time to run. Therefore, they should be pre-built. You can render them manually by running long_vignettes/render-long-vignettes.R. This will use
knitr to run the vignette and put the result into the
vignettes folder, along with output figures.