R/buildReferenceData.R
getChromSizesFromFasta.Rd
Get gene models from a remote or local FASTA file
getChromSizesFromFasta(source, destDir = NULL, convertEnsemblUCSC = FALSE)
a named vector of sequence lengths
CElegansFasteCropped = system.file("extdata",
"C_elegans_cropped_example.fa.gz",
package="GenomicDistributions")
CElegansChromSizes = getChromSizesFromFasta(CElegansFasteCropped)
#> Got local file: /private/var/folders/2n/wsp2zcc13jz9g_my_jhrwjk40000gq/T/Rtmp7hAr10/temp_libpath979f7e058fd3/GenomicDistributions/extdata/C_elegans_cropped_example.fa.gz