The MIRA package aggregates DNA methylation across the genome for instances of a genomic feature like histone ChIP peaks, transcription factor ChIP peaks, or open chromatin regions in order to give a single signature and score for that feature, which may be used to infer regulatory activity.

### Installing MIRA

MIRA may be installed from Github:

devtools::install_github("databio/MIRA")

install.packages("path/to/MIRA/directory", repos=NULL, type="source")