Looper stats summary

sample_name sample_description treatment_description organism protocol data_source SRR SRX Sample_geo_accession Sample_series_id read_type Sample_instrument_model read1 read2 File_mb Read_type Genome Raw_reads Fastq_reads Trimmed_reads Trim_loss_rate Aligned_reads_rCRSd_3k Alignment_rate_rCRSd_3k Aligned_reads_human_repeats Alignment_rate_human_repeats Mapped_reads QC_filtered_reads Aligned_reads Alignment_rate Total_efficiency Mitochondrial_reads NRF PBC1 PBC2 Unmapped_reads Duplicate_reads Dedup_aligned_reads Dedup_alignment_rate Dedup_total_efficiency TSS_Score Peak_count FRiP Time Success
gold1 ATAC-seq from dendritic cell (ENCLB065VMV) Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours human ATAC-seq SRA SRR5210416 SRX2523872 GSM2471255 GSE94182 PAIRED Illumina HiSeq 2000 /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210416_1.fastq.gz /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210416_2.fastq.gz 6493.3235 paired hg19 137944752 137944752 137924802 0.01 21049900.0 15.26 9761740.0 7.08 103202552 8281268.0 94921284 68.82 68.81 14990.0 0.94 0.97 31.77 3910610.0 1973449 92947835.0 67.39 67.38 9.00420993545 97483 0.148278799094 5:33:49 01-04-14:56:08
gold2 ATAC-seq from dendritic cell (ENCLB811FLK) Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours human ATAC-seq SRA SRR5210450 SRX2523906 GSM2471300 GSE94222 PAIRED Illumina HiSeq 2000 /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210450_1.fastq.gz /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210450_2.fastq.gz 1603.8181 paired hg19 28408648 28408648 28408460 0.0 11074130.0 38.98 1147860.0 4.04 16008042 1127526.0 14880516 52.38 52.38 946.0 0.93 0.96 27.59 178428.0 271118 14609398.0 51.43 51.43 12.5511477385 49890 0.164292421042 0:52:31 01-03-15:26:21
gold3 ATAC-seq from dendritic cell (ENCLB887PKE) Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours human ATAC-seq SRA SRR5210398 SRX2523862 GSM2471249 GSE94177 PAIRED Illumina NextSeq 500 /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210398_1.fastq.gz /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210398_2.fastq.gz 4809.4498 paired hg19 166092252 166092252 166090588 0.0 29229450.0 17.6 10699930.0 6.44 123357375 9669147.0 113688228 68.45 68.45 15230.0 0.9 0.95 18.86 2803833.0 3118698 110569530.0 66.57 66.57 10.5998173292 99691 0.154924879294 5:16:57 01-03-19:50:48
gold4 ATAC-seq from dendritic cell (ENCLB586KIS) Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours human ATAC-seq SRA SRR5210428 SRX2523884 GSM2471269 GSE94196 PAIRED Illumina HiSeq 2000 /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210428_1.fastq.gz /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210428_2.fastq.gz 3135.7354 paired hg19 101078490 101078490 101077540 0.0 14045392.0 13.9 7514112.0 7.43 77776972 6666740.0 71110232 70.35 70.35 6762.0 0.95 0.97 35.92 1741064.0 1017796 70092436.0 69.35 69.34 7.47369732517 77891 0.110209245274 4:05:39 01-03-18:40:00
gold5 ATAC-seq from dendritic cell (ENCLB384NOX) Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours human ATAC-seq SRA SRR5210390 SRX2523854 GSM2471245 GSE94173 PAIRED Illumina HiSeq 2000 /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210390_1.fastq.gz /sfs/lustre/allocations/shefflab/data/sra_fastq/SRR5210390_2.fastq.gz 3271.827 paired hg19 104881014 104881014 104879682 0.0 19947382.0 19.02 5705260.0 5.44 77535388 5833350.0 71702038 68.37 68.37 8423.0 0.94 0.97 32.04 1691652.0 1246861 70455177.0 67.18 67.18 13.134632225 116788 0.252560310768 3:00:57 01-04-12:23:16

Plottable Columns


Looper project objects