Looper stats summary

sample_name protocol organism read1 read2 read_type File_mb Read_type Genome Raw_reads Fastq_reads Trimmed_reads Trim_loss_rate Aligned_reads_rCRSd Alignment_rate_rCRSd Aligned_reads_human_repeats Alignment_rate_human_repeats Mapped_reads QC_filtered_reads Aligned_reads Alignment_rate Total_efficiency Mitochondrial_reads NRF PBC1 PBC2 Unmapped_reads Duplicate_reads Dedup_aligned_reads Dedup_alignment_rate Dedup_total_efficiency TSS_Score Peak_count FRiP Time Success
tutorial ATAC human /sfs/lustre/scratch/jps3dp/tools/databio//pepatac/examples/data/tutorial_r1.fastq.gz /sfs/lustre/scratch/jps3dp/tools/databio//pepatac/examples/data/tutorial_r2.fastq.gz paired 54.5006 paired hg38 2000000 2000000 2000000 0.0 199916.0 10.0 39944.0 2.0 1758578 7196.0 1751382 87.57 87.57 28.0 1.0 1.0 875678.0 1562.0 0 1751382.0 87.57 87.57 13.3252162768 16028 0.110150726683 0:36:21 01-08-10:54:45

Plottable Columns


Looper project objects