This method can be used to view the config slot of the Project-class class

config(object)

Arguments

object

an object of Project-class class

Value

a list with the config file

Examples

projectConfig = system.file("extdata", "example_peps-master", "example_subprojects1", "project_config.yaml", package="pepr") p=Project(projectConfig)
#> Loaded config file: #> /Users/mstolarczyk/Uczelnia/UVA/pepr/inst/extdata/example_peps-master/example_subprojects1/project_config.yaml #> subprojects: newLib,newLib2
config(p)
#> PEP project object. Class: Config #> metadata: #> sample_annotation: #> /Users/mstolarczyk/Uczelnia/UVA/pepr/inst/extdata/example_peps-master/example_subprojects1/sample_annotation.csv #> output_dir: /Users/mstolarczyk/hello_looper_results #> derived_attributes: file_path data_source #> data_sources: #> source1: /data/lab/project/{organism}_{time}h.fastq #> source2: /path/from/collaborator/weirdNamingScheme_{external_id}.fastq #> subprojects: #> newLib: #> metadata: #> sample_annotation: sample_annotation_newLib.csv #> newLib2: #> metadata: #> sample_annotation: sample_annotation_newLib2.csv #> name: example_subprojects1