Extract "Project"

This method can be used to view the config slot of the "Project" class

config(object)

# S4 method for Project
config(object)

Arguments

object	an object of "Project"

Value

project config

Methods (by class)

• Project: Extract "Project" of the object of "Project"

Examples

projectConfig = system.file("extdata", "example_peps-master",
"example_amendments1", "project_config.yaml", package="pepr")
p=Project(projectConfig)
#> Loading config file: /private/var/folders/3f/0wj7rs2144l9zsgxd3jn5nxc0000gn/T/RtmpEYsaEm/temp_libpath43b174cbd72/pepr/extdata/example_peps-master/example_amendments1/project_config.yaml
#>   amendments: newLib,newLib2
config(p)
#> Config object. Class: Config
#>  pep_version: 2.0.0
#>  sample_table: 
#> /private/var/folders/3f/0wj7rs2144l9zsgxd3jn5nxc0000gn/T/RtmpEYsaEm/temp_libpath43b174cbd72/pepr/extdata/example_peps-master/example_amendments1/sample_table.csv
#>  output_dir: /Users/mstolarczyk/hello_looper_results
#>  sample_modifiers:
#>     derive:
#>         attributes: file_path
#>         sources:
#>             source1: /data/lab/project/{organism}_{time}h.fastq
#>             source2: 
#> /path/from/collaborator/weirdNamingScheme_{external_id}.fastq
#>  project_modifiers:
#>     amend:
#>         newLib:
#>             sample_table: sample_table_newLib.csv
#>         newLib2:
#>             sample_table: sample_table_newLib2.csv
#>  name: example_amendments1