Read collection annotation

readCollectionAnnotation(dbLocation, collections = NULL)

Arguments

dbLocation

Location of the database

collections

Restrict the database loading to this list of collections. Leave NULL to load the entire database (Default).

Value

Collection annotation data.table

Examples

dbPath = system.file("extdata", "hg19", package="LOLA") collectionAnno = readCollectionAnnotation(dbLocation=dbPath)
#> Reading collection annotations:
#> ucsc_example: found collection annotation:/sfs/lustre/scratch/ns5bc/code/LOLA/inst/extdata/hg19/ucsc_example/collection.txt