BiocProject API

Exported functions of BiocProject

BiocProject()

Portable Encapsulated Project (PEP) for biological applications

config(<Annotated>)

View PEP config of the object of Project-class

getPipelineInterfaces()

Get the pipeline intraface(s)

getPipelines()

Get pipelines by protocol name

getProject()

Extract the object of Project-class from the Annotated-class

getProtocolMappings()

Get protocol mappings defined within a pipeline interface

is(<Annotated>)

Is an Object from a Class?

outputsByPipeline()

Populates and returns output files for a given pipeline

outputsByProtocols()

Populates and returns output files for a given protocol

samples(<Annotated>)

View samples in the objects of Project-class

samplesByProtocol()

Get samples that match the protocol

utilities

Extra non-exported utility functions

.unionList()

Update list with another list

.insertPEP()

Insert a PEP metadata in a metadata slot of Annotated

.pyToR()

Switches from python to R list accession syntax