pepr is an R package for reading Portable Encapsulated Projects, or PEPs, in R. pepr is currently in alpha and should not be used production projects. It is made available for conceptual and testing purposes only.

If you describe your project (configuration and samples) according to this format, you can load all project metadata into R using the pepr package.

These projects can also be used for any PEP-compatible pipeline (see this list of compatible pipelines).

Links to complete documentation:

Install

devtools::install_github("pepkit/pepr")

Quick start:

library('pepr')
p = Project(file = "~/code/microtest/config/microtest_config.yaml")

samples(p)
config(p)