Plot one or multiple methylation profiles. Displays each region set in a different subplot. If you only want to plot certain region sets, subset with the `featID` parameter.

plotMIRAProfiles(binnedRegDT, featID = unique(binnedRegDT[, featureID]),
  plotType = "line", colBlindOption = FALSE)

Arguments

binnedRegDT

A datatable with specific column names containing: bin numbers(binnedRegionDT column), aggregated methylation values (methylProp column), name of the region set (featureID column), case/control column (sampleType column), sample name (sampleName column).

featID

Region set names in a single string or vector of strings.

plotType

Line or jitter (ggplot2).

colBlindOption

If TRUE, function will plot with a color blind friendly palette which could be helpful when plotting multiple colors.

Value

A plot of class "gg"/ "ggplot" that shows MIRA signatures

Examples

data("exampleBins", package = "MIRA") MIRAplot = plotMIRAProfiles(binnedRegDT = exampleBins)